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Sample GSM1140618 Query DataSets for GSM1140618
Status Public on Feb 13, 2014
Title M_GMCSF_TPP_1h [5342595020_E]
Sample type RNA
 
Source name peripheral blood
Organism Homo sapiens
Characteristics initial differentiation: GM-CSF
activation stimuli: TNFa+PGE2+P3C
time: 1h
donor: BC85
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Macrophage
Data processing The data were log2-transformed and normalized using quantile normalization with Partek Genomics Suite
 
Submission date May 14, 2013
Last update date Feb 13, 2014
Contact name Joachim Schultze
E-mail(s) j.schultze@uni-bonn.de
Organization name LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
Department Genomics and Immunoregulation
Street address Carl-Troll-Strasse 31
City Bonn
State/province NRW
ZIP/Postal code 53115
Country Germany
 
Platform ID GPL6947
Series (2)
GSE46903 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation [Expression]
GSE47189 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation

Data table header descriptions
ID_REF
VALUE log2-transformed,quantile normalized
5342595020_E.Detection Pval

Data table
ID_REF VALUE 5342595020_E.Detection Pval
ILMN_1762337 6.29607 0.591568
ILMN_2055271 6.60004 0.0223979
ILMN_1736007 6.26806 0.710145
ILMN_2383229 6.34738 0.407115
ILMN_1806310 6.46668 0.105402
ILMN_1779670 6.75044 0.00527009
ILMN_1653355 6.66647 0.0118577
ILMN_1717783 6.37656 0.291173
ILMN_1705025 6.39881 0.243742
ILMN_1814316 6.25988 0.737813
ILMN_2359168 6.18976 0.899868
ILMN_1731507 6.41247 0.209486
ILMN_1787689 6.34617 0.40975
ILMN_1745607 7.45945 0
ILMN_2136495 6.2426 0.791831
ILMN_1668111 6.23809 0.802372
ILMN_2295559 6.25599 0.752306
ILMN_1735045 6.3121 0.529644
ILMN_1680754 6.22218 0.84585
ILMN_2375184 6.33042 0.471673

Total number of rows: 47463

Table truncated, full table size 1322 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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