NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1140629 Query DataSets for GSM1140629
Status Public on Feb 13, 2014
Title M_GMCSF_OA_24h [5342595026_D]
Sample type RNA
 
Source name peripheral blood
Organism Homo sapiens
Characteristics initial differentiation: GM-CSF
activation stimuli: OA
time: 24h
donor: BC 65
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Macrophage
Data processing The data were log2-transformed and normalized using quantile normalization with Partek Genomics Suite
 
Submission date May 14, 2013
Last update date Feb 13, 2014
Contact name Joachim Schultze
E-mail(s) j.schultze@uni-bonn.de
Organization name LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
Department Genomics and Immunoregulation
Street address Carl-Troll-Strasse 31
City Bonn
State/province NRW
ZIP/Postal code 53115
Country Germany
 
Platform ID GPL6947
Series (2)
GSE46903 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation [Expression]
GSE47189 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation

Data table header descriptions
ID_REF
VALUE log2-transformed,quantile normalized
5342595026_D.Detection Pval

Data table
ID_REF VALUE 5342595026_D.Detection Pval
ILMN_1762337 6.13312 0.948617
ILMN_2055271 6.39927 0.242424
ILMN_1736007 6.37896 0.289855
ILMN_2383229 6.33131 0.45191
ILMN_1806310 6.33754 0.428195
ILMN_1779670 6.27656 0.673254
ILMN_1653355 6.68794 0.00658761
ILMN_1717783 6.14792 0.939394
ILMN_1705025 6.47064 0.0988142
ILMN_1814316 6.15622 0.930171
ILMN_2359168 6.29819 0.586298
ILMN_1731507 6.25337 0.740448
ILMN_1787689 6.33329 0.44137
ILMN_1745607 8.22957 0
ILMN_2136495 6.24366 0.776021
ILMN_1668111 6.36512 0.330698
ILMN_2295559 6.41373 0.218709
ILMN_1735045 6.3509 0.387352
ILMN_1680754 6.2995 0.581028
ILMN_2375184 6.37207 0.310935

Total number of rows: 47463

Table truncated, full table size 1331 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap