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Sample GSM1140652 Query DataSets for GSM1140652
Status Public on Feb 13, 2014
Title M_GMCSF_PA_24h [5376074031_F]
Sample type RNA
 
Source name peripheral blood
Organism Homo sapiens
Characteristics initial differentiation: GM-CSF
activation stimuli: PA
time: 24h
donor: BC97
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Macrophage
Data processing The data were log2-transformed and normalized using quantile normalization with Partek Genomics Suite
 
Submission date May 14, 2013
Last update date Feb 13, 2014
Contact name Joachim Schultze
E-mail(s) j.schultze@uni-bonn.de
Organization name LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
Department Genomics and Immunoregulation
Street address Carl-Troll-Strasse 31
City Bonn
State/province NRW
ZIP/Postal code 53115
Country Germany
 
Platform ID GPL6947
Series (2)
GSE46903 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation [Expression]
GSE47189 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation

Data table header descriptions
ID_REF
VALUE log2-transformed,quantile normalized
5376074031_F.Detection Pval

Data table
ID_REF VALUE 5376074031_F.Detection Pval
ILMN_1762337 6.27437 0.699605
ILMN_2055271 6.4586 0.101449
ILMN_1736007 6.50416 0.0658762
ILMN_2383229 6.2693 0.71278
ILMN_1806310 6.33554 0.442688
ILMN_1779670 6.48765 0.0764163
ILMN_1653355 6.73558 0.00263505
ILMN_1717783 6.31924 0.504611
ILMN_1705025 6.26263 0.73913
ILMN_1814316 6.23104 0.818182
ILMN_2359168 6.35714 0.374177
ILMN_1731507 6.18229 0.893281
ILMN_1787689 6.46752 0.0909091
ILMN_1745607 6.89469 0
ILMN_2136495 6.55358 0.0329381
ILMN_1668111 6.2131 0.85112
ILMN_2295559 6.44276 0.131752
ILMN_1735045 6.54914 0.0355731
ILMN_1680754 6.04245 0.969697
ILMN_2375184 6.27441 0.699605

Total number of rows: 47463

Table truncated, full table size 1329 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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