NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1140658 Query DataSets for GSM1140658
Status Public on Feb 13, 2014
Title M_GMCSF_TPP_72h [5376074032_B]
Sample type RNA
 
Source name peripheral blood
Organism Homo sapiens
Characteristics initial differentiation: GM-CSF
activation stimuli: TNFa+PGE2+P3C
time: 72h
donor: BC12
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Macrophage
Data processing The data were log2-transformed and normalized using quantile normalization with Partek Genomics Suite
 
Submission date May 14, 2013
Last update date Feb 13, 2014
Contact name Joachim Schultze
E-mail(s) j.schultze@uni-bonn.de
Organization name LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
Department Genomics and Immunoregulation
Street address Carl-Troll-Strasse 31
City Bonn
State/province NRW
ZIP/Postal code 53115
Country Germany
 
Platform ID GPL6947
Series (2)
GSE46903 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation [Expression]
GSE47189 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation

Data table header descriptions
ID_REF
VALUE log2-transformed,quantile normalized
5376074032_B.Detection Pval

Data table
ID_REF VALUE 5376074032_B.Detection Pval
ILMN_1762337 6.28243 0.671937
ILMN_2055271 6.22386 0.844532
ILMN_1736007 6.29493 0.625823
ILMN_2383229 6.23604 0.815547
ILMN_1806310 6.2653 0.73913
ILMN_1779670 6.37783 0.330698
ILMN_1653355 6.42195 0.226614
ILMN_1717783 6.48985 0.118577
ILMN_1705025 6.41295 0.246377
ILMN_1814316 6.2836 0.665349
ILMN_2359168 6.36184 0.388669
ILMN_1731507 6.19552 0.890646
ILMN_1787689 6.5764 0.0434783
ILMN_1745607 6.39783 0.279315
ILMN_2136495 6.41645 0.241107
ILMN_1668111 6.62547 0.0316206
ILMN_2295559 6.37031 0.358366
ILMN_1735045 7.56033 0
ILMN_1680754 6.22088 0.85112
ILMN_2375184 6.34952 0.44137

Total number of rows: 47463

Table truncated, full table size 1336 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap