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Sample GSM1140738 Query DataSets for GSM1140738
Status Public on Feb 13, 2014
Title M_GMCSF_IL4_72h [5376074056_I]
Sample type RNA
 
Source name peripheral blood
Organism Homo sapiens
Characteristics initial differentiation: GM-CSF
activation stimuli: IL4
time: 72h
donor: BC66
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Macrophage
Data processing The data were log2-transformed and normalized using quantile normalization with Partek Genomics Suite
 
Submission date May 14, 2013
Last update date Feb 13, 2014
Contact name Joachim Schultze
E-mail(s) j.schultze@uni-bonn.de
Organization name LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
Department Genomics and Immunoregulation
Street address Carl-Troll-Strasse 31
City Bonn
State/province NRW
ZIP/Postal code 53115
Country Germany
 
Platform ID GPL6947
Series (2)
GSE46903 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation [Expression]
GSE47189 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation

Data table header descriptions
ID_REF
VALUE log2-transformed,quantile normalized
5376074056_I.Detection Pval

Data table
ID_REF VALUE 5376074056_I.Detection Pval
ILMN_1762337 6.45016 0.155468
ILMN_2055271 6.45522 0.147563
ILMN_1736007 6.44993 0.155468
ILMN_2383229 6.33928 0.479578
ILMN_1806310 6.24048 0.803689
ILMN_1779670 6.62247 0.0197628
ILMN_1653355 6.7761 0.00395257
ILMN_1717783 6.2211 0.841897
ILMN_1705025 6.39696 0.28722
ILMN_1814316 6.32834 0.519104
ILMN_2359168 6.28973 0.661397
ILMN_1731507 6.24425 0.794466
ILMN_1787689 6.19428 0.893281
ILMN_1745607 8.49061 0
ILMN_2136495 6.37218 0.361001
ILMN_1668111 6.3063 0.607378
ILMN_2295559 6.36363 0.389987
ILMN_1735045 6.29801 0.631094
ILMN_1680754 6.2065 0.86693
ILMN_2375184 6.3515 0.44137

Total number of rows: 47463

Table truncated, full table size 1328 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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