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Sample GSM1140772 Query DataSets for GSM1140772
Status Public on Feb 13, 2014
Title iTreg [4233291046_A]
Sample type RNA
 
Source name peripheral blood
Organism Homo sapiens
Characteristics initial differentiation: CD45RA+
activation stimuli: CD3/28 + TGF
time: 96h
donor: D15
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description T cell
Data processing The data were log2-transformed and normalized using quantile normalization with Partek Genomics Suite
 
Submission date May 14, 2013
Last update date Feb 13, 2014
Contact name Joachim Schultze
E-mail(s) j.schultze@uni-bonn.de
Organization name LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
Department Genomics and Immunoregulation
Street address Carl-Troll-Strasse 31
City Bonn
State/province NRW
ZIP/Postal code 53115
Country Germany
 
Platform ID GPL6947
Series (2)
GSE46903 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation [Expression]
GSE47189 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation

Data table header descriptions
ID_REF
VALUE log2-transformed,quantile normalized
4233291046_A.Detection Pval

Data table
ID_REF VALUE 4233291046_A.Detection Pval
ILMN_1762337 6.22589 0.789196
ILMN_2055271 6.43231 0.0922266
ILMN_1736007 6.40698 0.134387
ILMN_2383229 6.23489 0.757576
ILMN_1806310 6.42989 0.0935441
ILMN_1779670 6.4425 0.083004
ILMN_1653355 6.49607 0.0474308
ILMN_1717783 6.20929 0.822134
ILMN_1705025 6.40416 0.137022
ILMN_1814316 6.25335 0.669302
ILMN_2359168 6.33209 0.345191
ILMN_1731507 6.0664 0.965744
ILMN_1787689 6.35401 0.262187
ILMN_1745607 6.14848 0.920949
ILMN_2136495 6.19216 0.85639
ILMN_1668111 6.31879 0.392622
ILMN_2295559 6.34827 0.283267
ILMN_1735045 6.21971 0.803689
ILMN_1680754 6.27349 0.578393
ILMN_2375184 6.29451 0.486166

Total number of rows: 47463

Table truncated, full table size 1342 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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