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Sample GSM1142598 Query DataSets for GSM1142598
Status Public on Sep 05, 2013
Title Met fl/fl_HPC 3
Sample type RNA
 
Source name Met fl/fl_HPC
Organism Mus musculus
Characteristics strain backgroud: C57BL/6
genotype/variation: Met fl/fl
tissue: liver
cell type: hepatic progenitor cells (HPC)
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen mini kit. Quality control and measurement were performed using NanoDrop and Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion Totalprep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description SAMPLE 6
Data processing Data was processed by means of Genome Studio v2011.1 from illumina, Inc. The background noise was substrated and quantile normalization was applied.
 
Submission date May 15, 2013
Last update date Sep 05, 2013
Contact name Jesper B Andersen
Organization name Copenhagen University
Department Biotech Research and Innovation Centre
Lab Andersen Group
Street address Ole Maaloes Vej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL6885
Series (1)
GSE46981 Profiling of hepatic progenitor cells isolated from Egfr fl/fl and Met fl/fl murine control livers

Data table header descriptions
ID_REF
VALUE Quantile normalized with background noise subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 4884.223 0
ILMN_2721178 1527.304 0
ILMN_3033922 780.2163 0
ILMN_3092673 3821.234 0
ILMN_2816356 38.24371 0.002506266
ILMN_2808939 1598.07 0
ILMN_2634564 233.7815 0.001253133
ILMN_2737647 -1.469224 0.5363408
ILMN_2734484 494.6431 0
ILMN_2952292 81.90291 0.001253133
ILMN_2699078 4.513395 0.2280702
ILMN_1213681 188.3221 0.001253133
ILMN_2735413 -0.7147015 0.5025063
ILMN_2735415 10.83493 0.06390978
ILMN_2891688 354.6352 0
ILMN_2637698 584.2452 0
ILMN_2674228 143.678 0.001253133
ILMN_2601546 6.527544 0.1629073
ILMN_1230831 -1.604118 0.5438597
ILMN_2848071 -0.2699497 0.4786967

Total number of rows: 25697

Table truncated, full table size 793 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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