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Sample GSM1142820 Query DataSets for GSM1142820
Status Public on May 02, 2014
Title brain_wt rep1
Sample type RNA
Source name brain
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype: wild type
mutation: wild type
age: 18.5 weeks
mouse id: 30205845
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 1
replicate 1
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date May 16, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47005 Generation and standardized, systemic phenotypic analysis of Kctd1 mutant mice

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 860.6571 0
ILMN_2721178 207.2264 0
ILMN_3033922 329.3428 0
ILMN_3092673 1350.431 0
ILMN_2816356 5.647043 0.05639098
ILMN_2808939 310.424 0
ILMN_2634564 55.41814 0
ILMN_2737647 1.016822 0.3220551
ILMN_2734484 70.00282 0
ILMN_2952292 16.13236 0.003759399
ILMN_2699078 3.054147 0.1215539
ILMN_1213681 88.936 0
ILMN_2735413 -0.5115633 0.5726817
ILMN_2735415 1.171113 0.3007519
ILMN_2891688 99.41875 0
ILMN_2637698 433.5041 0
ILMN_2674228 76.02 0
ILMN_2601546 3.297486 0.1102757
ILMN_1230831 2.276536 0.1741855
ILMN_2848071 8.266733 0.03508772

Total number of rows: 25697

Table truncated, full table size 747 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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