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Sample GSM1142821 Query DataSets for GSM1142821
Status Public on May 02, 2014
Title brain_het rep1
Sample type RNA
Source name brain
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype: heterozygote
mutation: Kctd1L27N
age: 18.5 weeks
mouse id: 30205816
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 2
replicate 1
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date May 16, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47005 Generation and standardized, systemic phenotypic analysis of Kctd1 mutant mice

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 937.9003 0
ILMN_2721178 179.6442 0
ILMN_3033922 304.3016 0
ILMN_3092673 1459.322 0
ILMN_2816356 1.412549 0.2481203
ILMN_2808939 306.8811 0
ILMN_2634564 91.18914 0
ILMN_2737647 -1.453512 0.7192982
ILMN_2734484 79.78079 0
ILMN_2952292 15.73253 0.005012531
ILMN_2699078 -2.582016 0.8571429
ILMN_1213681 85.32974 0
ILMN_2735413 -2.519925 0.8546366
ILMN_2735415 -2.857243 0.877193
ILMN_2891688 99.54543 0
ILMN_2637698 418.1947 0
ILMN_2674228 71.86882 0
ILMN_2601546 4.083462 0.08646616
ILMN_1230831 -1.092722 0.6616541
ILMN_2848071 -0.2509349 0.4912281

Total number of rows: 25697

Table truncated, full table size 750 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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