NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1142822 Query DataSets for GSM1142822
Status Public on May 02, 2014
Title brain_wt rep2
Sample type RNA
 
Source name brain
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype: wild type
mutation: wild type
age: 18.5 weeks
mouse id: 30205817
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 3
replicate 2
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
 
Submission date May 16, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE47005 Generation and standardized, systemic phenotypic analysis of Kctd1 mutant mice

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1003.88 0
ILMN_2721178 228.2937 0
ILMN_3033922 292.2495 0
ILMN_3092673 1425.882 0
ILMN_2816356 -0.7295572 0.60401
ILMN_2808939 297.3586 0
ILMN_2634564 65.30897 0
ILMN_2737647 7.33253 0.04636591
ILMN_2734484 98.82167 0
ILMN_2952292 19.0473 0.003759399
ILMN_2699078 -0.5272462 0.5676692
ILMN_1213681 99.03274 0
ILMN_2735413 -3.021767 0.8847118
ILMN_2735415 -1.746332 0.7518797
ILMN_2891688 68.99757 0
ILMN_2637698 482.9979 0
ILMN_2674228 74.67589 0
ILMN_2601546 0.3527546 0.4273183
ILMN_1230831 0.5686524 0.3897243
ILMN_2848071 3.779311 0.1115288

Total number of rows: 25697

Table truncated, full table size 747 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap