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Sample GSM1142825 Query DataSets for GSM1142825
Status Public on May 02, 2014
Title brain_het rep2
Sample type RNA
 
Source name brain
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype: heterozygote
mutation: Kctd1L27N
age: 18.5 weeks
mouse id: 30205818
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 6
replicate 2
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
 
Submission date May 16, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE47005 Generation and standardized, systemic phenotypic analysis of Kctd1 mutant mice

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 987.7334 0
ILMN_2721178 196.4831 0
ILMN_3033922 261.1726 0
ILMN_3092673 1265.946 0
ILMN_2816356 2.454001 0.179198
ILMN_2808939 271.0565 0
ILMN_2634564 76.6567 0
ILMN_2737647 6.440624 0.05764411
ILMN_2734484 67.7784 0
ILMN_2952292 12.35658 0.01629073
ILMN_2699078 1.133958 0.283208
ILMN_1213681 91.19247 0
ILMN_2735413 -4.33919 0.9310777
ILMN_2735415 0.09636176 0.4260652
ILMN_2891688 85.55878 0
ILMN_2637698 474.114 0
ILMN_2674228 51.63116 0
ILMN_2601546 1.556208 0.2468672
ILMN_1230831 2.084659 0.1992481
ILMN_2848071 5.961463 0.0689223

Total number of rows: 25697

Table truncated, full table size 747 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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