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Sample GSM1142826 Query DataSets for GSM1142826
Status Public on May 02, 2014
Title brain_het rep3
Sample type RNA
 
Source name brain
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype: heterozygote
mutation: Kctd1L27N
age: 18.5 weeks
mouse id: 30205814
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 7
replicate 3
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
 
Submission date May 16, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE47005 Generation and standardized, systemic phenotypic analysis of Kctd1 mutant mice

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 897.9993 0
ILMN_2721178 197.5013 0
ILMN_3033922 285.2121 0
ILMN_3092673 1248.295 0
ILMN_2816356 -1.736669 0.7894737
ILMN_2808939 291.0828 0
ILMN_2634564 63.51311 0
ILMN_2737647 0.725597 0.3721805
ILMN_2734484 80.85845 0
ILMN_2952292 8.704582 0.03759398
ILMN_2699078 -2.583979 0.8546366
ILMN_1213681 82.9139 0
ILMN_2735413 -0.9674945 0.6766917
ILMN_2735415 -2.738032 0.8646616
ILMN_2891688 108.3616 0
ILMN_2637698 449.9406 0
ILMN_2674228 81.44082 0
ILMN_2601546 0.869653 0.3533835
ILMN_1230831 3.648124 0.1353384
ILMN_2848071 5.05006 0.0914787

Total number of rows: 25697

Table truncated, full table size 759 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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