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Sample GSM1142830 Query DataSets for GSM1142830
Status Public on May 02, 2014
Title heart_wt rep2
Sample type RNA
 
Source name heart
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype: wild type
mutation: wild type
age: 18.5 weeks
mouse id: 30205817
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 11
replicate 2
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
 
Submission date May 16, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE47005 Generation and standardized, systemic phenotypic analysis of Kctd1 mutant mice

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1864.451 0
ILMN_2721178 209.3204 0
ILMN_3033922 300.3643 0
ILMN_3092673 1144.803 0
ILMN_2816356 3.913002 0.1165414
ILMN_2808939 38.39708 0
ILMN_2634564 60.93269 0
ILMN_2737647 5.779384 0.0651629
ILMN_2734484 150.1292 0
ILMN_2952292 8.546567 0.03508772
ILMN_2699078 -1.102115 0.6578947
ILMN_1213681 268.3911 0
ILMN_2735413 -1.96048 0.7894737
ILMN_2735415 -0.3226882 0.5401003
ILMN_2891688 214.025 0
ILMN_2637698 396.4781 0
ILMN_2674228 50.8141 0
ILMN_2601546 0.7978884 0.3521303
ILMN_1230831 -0.8030376 0.6215539
ILMN_2848071 1.340089 0.2844611

Total number of rows: 25697

Table truncated, full table size 737 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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