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Sample GSM1142833 Query DataSets for GSM1142833
Status Public on May 02, 2014
Title heart_het rep2
Sample type RNA
Source name heart
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype: heterozygote
mutation: Kctd1L27N
age: 18.5 weeks
mouse id: 30205818
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 14
replicate 2
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date May 16, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47005 Generation and standardized, systemic phenotypic analysis of Kctd1 mutant mice

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1710.575 0
ILMN_2721178 190.9835 0
ILMN_3033922 250.6911 0
ILMN_3092673 1173.906 0
ILMN_2816356 8.57167 0.03132832
ILMN_2808939 41.43032 0
ILMN_2634564 56.62154 0
ILMN_2737647 1.735663 0.2506266
ILMN_2734484 162.4714 0
ILMN_2952292 7.253892 0.04010025
ILMN_2699078 0.4791763 0.4197995
ILMN_1213681 284.7578 0
ILMN_2735413 -0.1375517 0.5
ILMN_2735415 -1.133941 0.6616541
ILMN_2891688 232.432 0
ILMN_2637698 407.1919 0
ILMN_2674228 54.20525 0
ILMN_2601546 2.723353 0.1817043
ILMN_1230831 3.214227 0.1466165
ILMN_2848071 5.896702 0.06766918

Total number of rows: 25697

Table truncated, full table size 752 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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