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Sample GSM1142835 Query DataSets for GSM1142835
Status Public on May 02, 2014
Title heart_het rep4
Sample type RNA
Source name heart
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype: heterozygote
mutation: Kctd1L27N
age: 18.5 weeks
mouse id: 30205829
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 16
replicate 4
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date May 16, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47005 Generation and standardized, systemic phenotypic analysis of Kctd1 mutant mice

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1849.15 0
ILMN_2721178 196.079 0
ILMN_3033922 292.9107 0
ILMN_3092673 1259.105 0
ILMN_2816356 3.421175 0.1654135
ILMN_2808939 42.40872 0
ILMN_2634564 64.30832 0
ILMN_2737647 6.125486 0.08145364
ILMN_2734484 135.5696 0
ILMN_2952292 10.98102 0.01879699
ILMN_2699078 -0.7467319 0.6152882
ILMN_1213681 309.1765 0
ILMN_2735413 2.877073 0.1992481
ILMN_2735415 -1.478722 0.7368421
ILMN_2891688 216.528 0
ILMN_2637698 366.7608 0
ILMN_2674228 41.01632 0
ILMN_2601546 9.224911 0.03383459
ILMN_1230831 0.7510099 0.4035088
ILMN_2848071 10.48901 0.01879699

Total number of rows: 25697

Table truncated, full table size 744 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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