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Sample GSM1142836 Query DataSets for GSM1142836
Status Public on May 02, 2014
Title kidney_wt rep1
Sample type RNA
Source name kidney
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype: wild type
mutation: wild type
age: 18.5 weeks
mouse id: 30205845
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 17
replicate 1
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date May 16, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47005 Generation and standardized, systemic phenotypic analysis of Kctd1 mutant mice

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1131.256 0
ILMN_2721178 265.1379 0
ILMN_3033922 597.1747 0
ILMN_3092673 2480.06 0
ILMN_2816356 1.580553 0.2443609
ILMN_2808939 149.8289 0
ILMN_2634564 28.65402 0
ILMN_2737647 3.390305 0.1027569
ILMN_2734484 85.42515 0
ILMN_2952292 42.48162 0
ILMN_2699078 -0.978827 0.6679198
ILMN_1213681 99.85406 0
ILMN_2735413 43.3383 0
ILMN_2735415 62.60235 0
ILMN_2891688 141.007 0
ILMN_2637698 191.4644 0
ILMN_2674228 72.77371 0
ILMN_2601546 3.543964 0.09649123
ILMN_1230831 1.468339 0.2681704
ILMN_2848071 165.7858 0

Total number of rows: 25697

Table truncated, full table size 757 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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