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Sample GSM1142841 Query DataSets for GSM1142841
Status Public on May 02, 2014
Title kidney_het rep2
Sample type RNA
Source name kidney
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype: heterozygote
mutation: Kctd1L27N
age: 18.5 weeks
mouse id: 30205818
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 22
replicate 2
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date May 16, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47005 Generation and standardized, systemic phenotypic analysis of Kctd1 mutant mice

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1413.99 0
ILMN_2721178 250.9075 0
ILMN_3033922 404.3083 0
ILMN_3092673 2451.211 0
ILMN_2816356 1.942974 0.2380952
ILMN_2808939 133.6428 0
ILMN_2634564 32.87319 0
ILMN_2737647 -1.149938 0.7117795
ILMN_2734484 78.15199 0
ILMN_2952292 50.75124 0
ILMN_2699078 0.1883764 0.4974937
ILMN_1213681 93.88926 0
ILMN_2735413 46.74234 0
ILMN_2735415 84.96857 0
ILMN_2891688 142.3564 0
ILMN_2637698 244.1341 0
ILMN_2674228 85.62076 0
ILMN_2601546 0.8971444 0.3796993
ILMN_1230831 -0.473474 0.6015037
ILMN_2848071 241.5455 0

Total number of rows: 25697

Table truncated, full table size 761 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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