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Sample GSM1142843 Query DataSets for GSM1142843
Status Public on May 02, 2014
Title kidney_het rep4
Sample type RNA
 
Source name kidney
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype: heterozygote
mutation: Kctd1L27N
age: 18.5 weeks
mouse id: 30205829
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 24
replicate 4
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
 
Submission date May 16, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE47005 Generation and standardized, systemic phenotypic analysis of Kctd1 mutant mice

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1411.385 0
ILMN_2721178 254.5453 0
ILMN_3033922 390.759 0
ILMN_3092673 2613.804 0
ILMN_2816356 2.224473 0.1754386
ILMN_2808939 184.6847 0
ILMN_2634564 59.64092 0
ILMN_2737647 1.110628 0.3057644
ILMN_2734484 102.0871 0
ILMN_2952292 48.76561 0
ILMN_2699078 -0.348411 0.5726817
ILMN_1213681 97.2979 0
ILMN_2735413 37.02416 0
ILMN_2735415 66.74049 0
ILMN_2891688 193.2341 0
ILMN_2637698 198.5957 0
ILMN_2674228 81.67001 0
ILMN_2601546 0.1478834 0.4686717
ILMN_1230831 -1.930884 0.7894737
ILMN_2848071 266.5111 0

Total number of rows: 25697

Table truncated, full table size 751 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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