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Sample GSM1143641 Query DataSets for GSM1143641
Status Public on May 21, 2013
Title CuCPF07_3May07
Sample type RNA
 
Source name olfactory rosettes
Organism Danio rerio
Characteristics treatment: CPF= 0.6 , Cu= 0
tissue: olfactory rosettes, olfactory bulbs, and telencephalons
Biomaterial provider The University of Washington (Seattle, WA).
Extracted molecule total RNA
Extraction protocol RNA extraction was performed by the CEEH Genomics Core Laboratory followed by the manufacturer’s protocols using the GeneChip platform by Affymetrix.
Label biotin
Label protocol For microarray hybridization, RNA was processed for hybridization to Affymetrix Zebrafish Arrays through a core facility in the Functional Genomics Laboratory in the Center for Ecogenetics and Environmental Health at the University of Washington according to the manufacturer's instructions.
 
Hybridization protocol The standard hybridization protocol was used as recommended by Affymterix.
Scan protocol GeneChips were scanned using the Affymetrix GeneArray Scanner 3000 through the University of Washington Functional Genomics Laboratory in the Center for Ecogenetics and Environmental Health (http://depts.washington.edu/ceeh/ServiceCores/FC1/FC1.html).
Description olfactory rosettes
Data processing Bioconductor, GCRMA normalization log2
 
Submission date May 16, 2013
Last update date Sep 05, 2017
Contact name James William MacDonald
E-mail(s) jmacdon@uw.edu
Organization name University of Washington
Department Environmental and Occupational Health Sciences
Street address 4225 Roosevelt Way NE
City Seattle
State/province WA
ZIP/Postal code 98105-6099
Country USA
 
Platform ID GPL1319
Series (1)
GSE47039 Transcriptional impact of organophosphate and metal mixtures on olfaction: copper dominates the chlorpyrifos-induced response in adult zebrafish.

Data table header descriptions
ID_REF
VALUE GCRMA normalized signal log2

Data table
ID_REF VALUE
AFFX-BioB-3_at 4.710398372
AFFX-BioB-5_at 5.955528211
AFFX-BioB-M_at 6.725404916
AFFX-BioC-3_at 8.016358481
AFFX-BioC-5_at 8.096744883
AFFX-BioDn-3_at 10.44865879
AFFX-BioDn-5_at 10.06075928
AFFX-CreX-3_at 13.6377813
AFFX-CreX-5_at 12.81764424
AFFX-DapX-3_at 8.412520427
AFFX-DapX-5_at 7.361826547
AFFX-DapX-M_at 8.266707115
AFFX-Dr-AB076373-1_at 2.076486908
AFFX-Dr-acta1-3_at 3.42952881
AFFX-Dr-acta1-5_at 1.080799857
AFFX-Dr-acta1-5_x_at 3.794191958
AFFX-Dr-acta1-M_at 3.869987402
AFFX-Dr-AF292559-1_at 1.792205963
AFFX-Dr-AF292559-2_s_at 3.684791983
AFFX-Dr-AF292559-3_s_at 2.91756291

Total number of rows: 15617

Table truncated, full table size 436 Kbytes.




Supplementary file Size Download File type/resource
GSM1143641_CuCPF07_3May07.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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