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Sample GSM1143946 Query DataSets for GSM1143946
Status Public on May 13, 2014
Title TO_BMC_0
Sample type RNA
Source name TO_BMC_0
Organism Mus musculus
Characteristics cell type: bone marrow cell
time: 0
treated: Yes
Extracted molecule total RNA
Extraction protocol 500 ng of total DNA-free RNA was used as input for labelled cRNA synthesis (Illumina TotalPrep RNA Amplification Kit - Ambion) following the manufacturer's instructions (IVT: 14h)
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The bead intensities were mapped to gene information using BeadStudio 3.2 (Illumina), background correction was perform using the Affymetrix Robust Multi-array Analysis (RMA) background correction model, variance stabilization was performed using the log2 scaling and gene expression normalization was calculated with the quantile method implemented in the lumi package of R-Bioconductor.
Submission date May 17, 2013
Last update date May 13, 2014
Contact name Marcos J Ara├║zo-Bravo
Organization name Max Planck Institute for Molecular Biomedicine
Department Cell and Developmental Biology
Lab Computational Biology and Bioinformatics
Street address Rontgenstr. 20
City Muenster
ZIP/Postal code 48149
Country Germany
Platform ID GPL6885
Series (1)
GSE47061 Dissecting the specific role of Oct4 during the early stage of reprogramming

Data table header descriptions
VALUE quantile normalized

Data table
ILMN_1212607 3.015775
ILMN_1212612 2.142633
ILMN_1212619 6.441797
ILMN_1212628 3.15739
ILMN_1212632 3.753163
ILMN_1212636 11.136776
ILMN_1212637 8.602399
ILMN_1212645 4.068564
ILMN_1212648 7.800295
ILMN_1212653 5.26143
ILMN_1212672 6.011631
ILMN_1212682 5.462903
ILMN_1212683 1.720042
ILMN_1212685 2.447113
ILMN_1212692 3.4293
ILMN_1212693 7.448041
ILMN_1212695 5.704801
ILMN_1212698 1.93821
ILMN_1212702 9.23608
ILMN_1212703 5.278951

Total number of rows: 25697

Table truncated, full table size 551 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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