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Sample GSM1143949 Query DataSets for GSM1143949
Status Public on May 13, 2014
Title TO_BMC_24
Sample type RNA
Source name TO_BMC_24
Organism Mus musculus
Characteristics cell type: bone marrow cell
time: 24
treated: Yes
Extracted molecule total RNA
Extraction protocol 500 ng of total DNA-free RNA was used as input for labelled cRNA synthesis (Illumina TotalPrep RNA Amplification Kit - Ambion) following the manufacturer's instructions (IVT: 14h)
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The bead intensities were mapped to gene information using BeadStudio 3.2 (Illumina), background correction was perform using the Affymetrix Robust Multi-array Analysis (RMA) background correction model, variance stabilization was performed using the log2 scaling and gene expression normalization was calculated with the quantile method implemented in the lumi package of R-Bioconductor.
Submission date May 17, 2013
Last update date May 13, 2014
Contact name Marcos J Ara├║zo-Bravo
Organization name Max Planck Institute for Molecular Biomedicine
Department Cell and Developmental Biology
Lab Computational Biology and Bioinformatics
Street address Rontgenstr. 20
City Muenster
ZIP/Postal code 48149
Country Germany
Platform ID GPL6885
Series (1)
GSE47061 Dissecting the specific role of Oct4 during the early stage of reprogramming

Data table header descriptions
VALUE quantile normalized

Data table
ILMN_1212607 3.654048
ILMN_1212612 2.426867
ILMN_1212619 5.627107
ILMN_1212628 2.581599
ILMN_1212632 2.872011
ILMN_1212636 11.259054
ILMN_1212637 8.720266
ILMN_1212645 2.083927
ILMN_1212648 7.688219
ILMN_1212653 5.071954
ILMN_1212672 5.392678
ILMN_1212682 5.17321
ILMN_1212683 2.33957
ILMN_1212685 1.92133
ILMN_1212692 2.768383
ILMN_1212693 7.618088
ILMN_1212695 4.988709
ILMN_1212698 1.95426
ILMN_1212702 7.62799
ILMN_1212703 4.890949

Total number of rows: 25697

Table truncated, full table size 551 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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