GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1143951 Query DataSets for GSM1143951
Status Public on May 13, 2014
Title TO_NSC_6
Sample type RNA
Source name TO_NSC_6
Organism Mus musculus
Characteristics cell type: neural stem cell
time: 6
treated: Yes
Extracted molecule total RNA
Extraction protocol 500 ng of total DNA-free RNA was used as input for labelled cRNA synthesis (Illumina TotalPrep RNA Amplification Kit - Ambion) following the manufacturer's instructions (IVT: 14h)
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The bead intensities were mapped to gene information using BeadStudio 3.2 (Illumina), background correction was perform using the Affymetrix Robust Multi-array Analysis (RMA) background correction model, variance stabilization was performed using the log2 scaling and gene expression normalization was calculated with the quantile method implemented in the lumi package of R-Bioconductor.
Submission date May 17, 2013
Last update date May 13, 2014
Contact name Marcos J Ara├║zo-Bravo
Organization name Max Planck Institute for Molecular Biomedicine
Department Cell and Developmental Biology
Lab Computational Biology and Bioinformatics
Street address Rontgenstr. 20
City Muenster
ZIP/Postal code 48149
Country Germany
Platform ID GPL6885
Series (1)
GSE47061 Dissecting the specific role of Oct4 during the early stage of reprogramming

Data table header descriptions
VALUE quantile normalized

Data table
ILMN_1212607 3.523209
ILMN_1212612 5.219463
ILMN_1212619 7.372236
ILMN_1212628 2.551955
ILMN_1212632 4.144457
ILMN_1212636 11.922009
ILMN_1212637 9.699547
ILMN_1212645 2.552161
ILMN_1212648 7.475565
ILMN_1212653 8.327826
ILMN_1212672 8.230395
ILMN_1212682 3.09154
ILMN_1212683 2.162281
ILMN_1212685 2.197294
ILMN_1212692 2.443073
ILMN_1212693 7.629133
ILMN_1212695 2.13454
ILMN_1212698 1.644655
ILMN_1212702 1.876639
ILMN_1212703 5.671878

Total number of rows: 25697

Table truncated, full table size 551 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap