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Sample GSM1144756 Query DataSets for GSM1144756
Status Public on May 21, 2013
Title Pooled sample at d1, right plantaris, young mice
Sample type RNA
Source name Right plantaris muscle, d1
Organism Mus musculus
Characteristics strain/background: C57BL/6J
gender: male
tissue: skeletal muscle (right plantaris)
age: 5 months
treatment: muscle hypertrophy induced by synergist ablation
time point: day 1
Growth protocol Male C57BL/6J mice (The Jackson Laboratory, Bar Harbor, ME), 5 months of age were housed in a temperature- and humidity-controlled facility on a 14:10 h light:dark cycle with access to food and water ad libitum.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cDNA were prepared according to the standard Ambion and Affymetrix protocol from 250 ng total RNA (Ambion WT Expression kit and Affymetrix WT Terminal Labeling kit).
Hybridization protocol Following fragmentation, 2.5 ug of cDNA were hybridized for 17 hr at 45C on GeneChip Mouse Gene 1.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip 7G Scanner.
Description Overload d1, right
Gene expression data from right plantaris muscle, d1
Data processing The CEL data were generated using Affymetrix Command Console software and the data analysis was performed using Partek Genomics Suite.
Submission date May 20, 2013
Last update date May 21, 2013
Contact name Thomas Chaillou
Organization name Department of Physiology
Street address University of Kentucky, Department of Physiology, 800 Rose Street
City Lexington
State/province KY
ZIP/Postal code 40536-0298
Country USA
Platform ID GPL6246
Series (1)
GSE47098 Expression data during plantaris muscle hypertrophy induced by synergist ablation in young adult mice

Data table header descriptions
VALUE RMA signal intensity

Data table
10338001 6318.6
10338002 228.08
10338003 2204.6
10338004 991.9
10338005 9.3
10338006 11.5
10338007 18.6
10338008 42.8
10338009 784.0
10338010 9.7
10338011 168.0
10338012 10.3
10338013 8.1
10338014 8.7
10338015 8.4
10338016 532.8
10338017 11707.9
10338018 315.4
10338019 119.9
10338020 749.1

Total number of rows: 35556

Table truncated, full table size 518 Kbytes.

Supplementary file Size Download File type/resource
GSM1144756_5-1R.CEL.gz 4.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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