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Sample GSM115046 Query DataSets for GSM115046
Status Public on Jul 10, 2006
Title Monocyte at T0, biological rep1 HG-U133A
Sample type RNA
Source name Blood
Organism Homo sapiens
Characteristics Monocyte at T0, biological rep1
Treatment protocol freshly isolated monocytes
Growth protocol Cells were cultured in Petriperm dishes tomimic circulating conditions
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 series. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Description Monocytes
Data processing The data were analyzed with RNA using Bioconductor's R.
Submission date Jun 19, 2006
Last update date Jul 15, 2019
Contact name Fernando O Martinez Estrada
Organization name University of Surrey
Department Faculty of Health & Medical Sciences
Lab Innate Immunity
Street address Stag Hill
City Guildford
State/province Surrey
ZIP/Postal code GU2 7XH
Country United Kingdom
Platform ID GPL96
Series (2)
GSE5099 Expression Data from Macrophage Maturation and Polarization Experiment
GSE35495 Genome-wide analysis of human and mouse macrophages, resting and activated
Reanalyzed by GSE86363
Reanalyzed by GSE134312

Data table header descriptions
VALUE RMA-calculated Signal intensity

Data table
1007_s_at 8.500881441
1053_at 7.629762005
117_at 8.55738676
121_at 9.653589336
1255_g_at 4.899582567
1294_at 8.154127585
1316_at 7.038154391
1320_at 5.60549036
1405_i_at 6.214559
1431_at 4.357182048
1438_at 7.597127285
1487_at 8.935540853
1494_f_at 7.460896625
1598_g_at 9.832535299
160020_at 9.922533321
1729_at 9.309864752
177_at 5.757551802
1773_at 6.650456257
179_at 10.27987064
1861_at 6.500005765

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM115046_M0_D1_chipA.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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