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Sample GSM115664 Query DataSets for GSM115664
Status Public on Sep 01, 2006
Title LungTissue_GavageTreatment_CornOil_Control_Animal25
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Lung, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade
Organism Mus musculus
Characteristics Array Type: Affymetrix Mouse 430_2
Amount to Core: 10
Units of Amount: ug
OD260: 0.619
OD280: 0.225
Ratio: 2.07
RNA Integrity Number: 8.8
Bioanalyzer Results: Good
Sample Preservation: RNA later
Strain or Line: B6C3F1
NCBI Taxonomy ID: 10090
Individual: 25
Developmental State: Adult
Sacrifice Method: Pentobarbital (5.2 mg/kg) and exsanguination
Sex: Female
Age: 18
Units of Age: weeks
Biomaterial provider R. Thomas, CIIT Centers for Health Research, 6 Davis Dr, RTP, NC, 27709, R. Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Corn Oil, Treatment Repeat: 1, Units of Treatment Repeat: day, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 5, Units of Treatment Time: days/wk, Route of Exposure: Gavage, Dose or Concentration: 5, Units of Dose or Concentration: ml/kg
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description lung tissue, right lobe, gavage treatment, 13 weeks, 5 days per week, corn oil vehicle control
Data processing affylmGUI, The Walter and Eliza Hall Institute of Medical Research
 
Submission date Jun 21, 2006
Last update date Aug 28, 2018
Contact name Russell Scott Thomas
E-mail(s) rthomas@thehamner.org
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE5127 Gene Expression Biomarkers for Predicting Lung Tumors in Two-Year Rodent Bioassays
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe name
VALUE RMA Expressioni Value

Data table
ID_REF VALUE
1415670_at 8.684528712
1415671_at 9.951262066
1415672_at 10.43804728
1415673_at 7.256595926
1415674_a_at 9.256665883
1415675_at 8.288915456
1415676_a_at 10.66964107
1415677_at 8.509492792
1415678_at 10.07046091
1415679_at 10.98792963
1415680_at 8.652915297
1415681_at 8.92914639
1415682_at 7.275272063
1415683_at 9.992373391
1415684_at 8.336051589
1415685_at 7.462467725
1415686_at 9.761204515
1415687_a_at 11.73328581
1415688_at 9.633804482
1415689_s_at 7.244960631

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM115664.CEL.gz 6.0 Mb (ftp)(http) CEL

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