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Sample GSM115675 Query DataSets for GSM115675
Status Public on Sep 01, 2006
Title LungTissue_GavageTreatment_2,3-Benzofuran_Animal6
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Lung, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade
Organism Mus musculus
Characteristics Array Type: Affymetrix Mouse 430_2
Amount to Core: 10
Units of Amount: ug
OD260: 0.763
OD280: 0.266
Ratio: 2.25
RNA Integrity Number: 9.2
Bioanalyzer Results: Good
Sample Preservation: RNA later
Strain or Line: B6C3F1
NCBI Taxonomy ID: 10090
Developmental State: Adult
Sacrifice Method: Pentobarbital (5.2 mg/kg) and exsanguination
Sex: Female
Age: 18
Units of Age: weeks
Biomaterial provider R. Thomas, CIIT Centers for Health Research, 6 Davis Dr, RTP, NC, 27709, R. Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: 2,3-Benzofuran, Treatment Repeat: 1, Units of Treatment Repeat: day, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 5, Units of Treatment Time: days/wk, Vehicle for Chemical: Corn oil, Amount of Vehicle: 5, Route of Exposure: Gavage, Units of Amount of Vehicle: ml/kg, Dose or Concentration: 240, Units of Dose or Concentration: mg/kg
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description lung tissue, right lobe, gavage treatment, 13 weeks, 5 days per week, 2,3-benzofuran, 240 mg per kg
Data processing affylmGUI, The Walter and Eliza Hall Institute of Medical Research
 
Submission date Jun 21, 2006
Last update date Aug 28, 2018
Contact name Russell Scott Thomas
E-mail(s) rthomas@thehamner.org
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE5127 Gene Expression Biomarkers for Predicting Lung Tumors in Two-Year Rodent Bioassays
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe name
VALUE RMA Expressioni Value

Data table
ID_REF VALUE
1415670_at 8.90283864
1415671_at 9.958767902
1415672_at 10.54539208
1415673_at 7.423465876
1415674_a_at 9.439477015
1415675_at 8.466810333
1415676_a_at 10.58648727
1415677_at 8.826428155
1415678_at 10.00387801
1415679_at 11.16007538
1415680_at 8.666088682
1415681_at 9.068531166
1415682_at 7.549008627
1415683_at 10.0334588
1415684_at 8.392963279
1415685_at 7.384479985
1415686_at 9.915721044
1415687_a_at 11.73394068
1415688_at 9.841119342
1415689_s_at 7.256595926

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM115675.CEL.gz 6.1 Mb (ftp)(http) CEL

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