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Sample GSM115678 Query DataSets for GSM115678
Status Public on Sep 01, 2006
Title LungTissue_FeedTreatment_Pentachloronitrobenzene_Animal16
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Lung, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade
Organism Mus musculus
Characteristics Array Type: Affymetrix Mouse 430_2
Amount to Core: 10
Units of Amount: ug
OD260: 4.018
OD280: 2.14
Ratio: 1.85
RNA Integrity Number: 8.9
Bioanalyzer Results: Good
Sample Preservation: RNA later
Strain or Line: B6C3F1
NCBI Taxonomy ID: 10090
Individual: 16
Developmental State: Adult
Sacrifice Method: Pentobarbital (5.2 mg/kg) and exsanguination
Sex: Female
Age: 18
Units of Age: weeks
Biomaterial provider R. Thomas, CIIT Centers for Health Research, 6 Davis Dr, RTP, NC, 27709, R. Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Pentachloronitrobenzene, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 7, Units of Treatment Time: days/wk, Route of Exposure: Diet, Dose or Concentration: 8187, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description lung tissue, right lobe, feed treatment, 13 weeks, 7 days per week, pentachloronitrobenzene, 8187 ppm
Data processing affylmGUI, The Walter and Eliza Hall Institute of Medical Research
 
Submission date Jun 21, 2006
Last update date Aug 28, 2018
Contact name Russell Scott Thomas
E-mail(s) rthomas@thehamner.org
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE5127 Gene Expression Biomarkers for Predicting Lung Tumors in Two-Year Rodent Bioassays
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe name
VALUE RMA Expressioni Value

Data table
ID_REF VALUE
1415670_at 8.724072039
1415671_at 10.08615075
1415672_at 10.7136485
1415673_at 7.457609622
1415674_a_at 9.30563344
1415675_at 8.368637053
1415676_a_at 10.57197479
1415677_at 8.795540847
1415678_at 10.04754699
1415679_at 11.20110938
1415680_at 8.643714547
1415681_at 8.943665025
1415682_at 7.406948556
1415683_at 10.00903365
1415684_at 8.58880526
1415685_at 7.888908511
1415686_at 10.15499398
1415687_a_at 11.77675312
1415688_at 9.735820469
1415689_s_at 7.664344051

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM115678.CEL.gz 5.8 Mb (ftp)(http) CEL

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