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Sample GSM115686 Query DataSets for GSM115686
Status Public on Sep 01, 2006
Title LiverTissue_FeedTreatment_Pentachloronitrobenzene_Animal20
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade
Organism Mus musculus
Characteristics Array Type: Affymetrix Mouse 430_2
Amount to Core: 10
Units of Amount: ug
OD260: 2.105
OD280: 1.097
Ratio: 1.93
Dilution: 10
RNA Integrity Number: 8.4
Bioanalyzer Results: Good
Sample Preservation: RNA later
Strain or Line: B6C3F1
NCBI Taxonomy ID: 10090
Individual: 20
Developmental State: Adult
Sacrifice Method: Pentobarbital (5.2 mg/kg) and exsanguination
Sex: Female
Age: 18
Units of Age: weeks
Biomaterial provider R. Thomas, CIIT Centers for Health Research, 6 Davis Dr, RTP, NC, 27709, R. Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Pentachloronitrobenzene, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 7, Units of Treatment Time: days/wk, Route of Exposure: Diet, Dose or Concentration: 8187, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description liver tissue, feed treatment, 13 weeks, 7 days per week, pentachloronitrobenzene, 8187 ppm
Data processing affylmGUI, The Walter and Eliza Hall Institute of Medical Research
 
Submission date Jun 21, 2006
Last update date Aug 28, 2018
Contact name Russell Scott Thomas
E-mail(s) rthomas@thehamner.org
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE5128 Gene Expression Biomarkers for Predicting Liver Tumors in Two-Year Rodent Bioassays
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe name
VALUE RMA Expressioni Value

Data table
ID_REF VALUE
1415670_at 8.359048404
1415671_at 9.269922527
1415672_at 9.78479007
1415673_at 6.134116255
1415674_a_at 7.819365974
1415675_at 7.229383917
1415676_a_at 10.42727606
1415677_at 9.76411911
1415678_at 9.940208215
1415679_at 9.844610545
1415680_at 7.570275833
1415681_at 8.734011488
1415682_at 6.850002363
1415683_at 9.84288396
1415684_at 9.067053663
1415685_at 7.781404448
1415686_at 8.814267226
1415687_a_at 10.64878977
1415688_at 9.223876112
1415689_s_at 6.40914974

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM115686.CEL.gz 5.8 Mb (ftp)(http) CEL

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