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Sample GSM115689 Query DataSets for GSM115689
Status Public on Sep 01, 2006
Title LiverTissue_GavageTreatment_CornOil_Control_Animal25
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade
Organism Mus musculus
Characteristics Array Type: Affymetrix Mouse 430_2
Amount to Core: 10
Units of Amount: ug
OD260: 1.446
OD280: 0.741
Ratio: 1.99
Dilution: 10
RNA Integrity Number: 8.8
Bioanalyzer Results: Good
Sample Preservation: RNA later
Strain or Line: B6C3F1
NCBI Taxonomy ID: 10090
Individual: 25
Developmental State: Adult
Sacrifice Method: Pentobarbital (5.2 mg/kg) and exsanguination
Sex: Female
Age: 18
Units of Age: weeks
Biomaterial provider R. Thomas, CIIT Centers for Health Research, 6 Davis Dr, RTP, NC, 27709, R. Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Corn Oil, Treatment Repeat: 1, Units of Treatment Repeat: day, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 5, Units of Treatment Time: days/wk, Route of Exposure: Gavage, Dose or Concentration: 5, Units of Dose or Concentration: ml/kg
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description liver tissue, gavage treatment, 13 weeks, 5 days per week, corn oil vehicle control
Data processing affylmGUI, The Walter and Eliza Hall Institute of Medical Research
 
Submission date Jun 21, 2006
Last update date Aug 28, 2018
Contact name Russell Scott Thomas
E-mail(s) rthomas@thehamner.org
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE5128 Gene Expression Biomarkers for Predicting Liver Tumors in Two-Year Rodent Bioassays
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe name
VALUE RMA Expressioni Value

Data table
ID_REF VALUE
1415670_at 8.138985357
1415671_at 9.268232545
1415672_at 9.668112041
1415673_at 5.698588427
1415674_a_at 7.615274531
1415675_at 7.320768861
1415676_a_at 10.08342514
1415677_at 9.815327322
1415678_at 9.877448148
1415679_at 9.768655012
1415680_at 7.378414633
1415681_at 8.612527849
1415682_at 6.638889956
1415683_at 9.617167675
1415684_at 8.957644999
1415685_at 7.372482149
1415686_at 8.813702035
1415687_a_at 10.37814992
1415688_at 9.177790852
1415689_s_at 6.174151191

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM115689.CEL.gz 5.8 Mb (ftp)(http) CEL

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