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Sample GSM115691 Query DataSets for GSM115691
Status Public on Sep 01, 2006
Title LiverTissue_FeedTreatment_Rodent Chow_Control_Animal28
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade
Organism Mus musculus
Characteristics Array Type: Affymetrix Mouse 430_2
Amount to Core: 10
Units of Amount: ug
OD260: 11.935
OD280: 6.173
Ratio: 1.94
Dilution: 10
RNA Integrity Number: 8.8
Bioanalyzer Results: Good
Sample Preservation: RNA later
Strain or Line: B6C3F1
NCBI Taxonomy ID: 10090
Individual: 28
Developmental State: Adult
Sacrifice Method: Pentobarbital (5.2 mg/kg) and exsanguination
Sex: Female
Age: 18
Units of Age: weeks
Biomaterial provider R. Thomas, CIIT Centers for Health Research, 6 Davis Dr, RTP, NC, 27709, R. Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Rodent Chow, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 7, Units of Treatment Time: days/wk, Route of Exposure: Diet
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description liver tissue, feed treatment, 13 weeks, 7 days per week, rodent chow control
Data processing affylmGUI, The Walter and Eliza Hall Institute of Medical Research
 
Submission date Jun 21, 2006
Last update date Aug 28, 2018
Contact name Russell Scott Thomas
E-mail(s) rthomas@thehamner.org
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE5128 Gene Expression Biomarkers for Predicting Liver Tumors in Two-Year Rodent Bioassays
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe name
VALUE RMA Expressioni Value

Data table
ID_REF VALUE
1415670_at 8.487774895
1415671_at 9.411038016
1415672_at 9.513969663
1415673_at 5.658374627
1415674_a_at 7.674993905
1415675_at 7.401821441
1415676_a_at 10.13290726
1415677_at 9.773869359
1415678_at 9.760943478
1415679_at 9.754761833
1415680_at 7.519939061
1415681_at 8.809693865
1415682_at 6.594969088
1415683_at 9.784336825
1415684_at 8.488615136
1415685_at 7.75782291
1415686_at 8.783838481
1415687_a_at 10.59803412
1415688_at 9.014595239
1415689_s_at 5.990444225

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM115691.CEL.gz 5.8 Mb (ftp)(http) CEL

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