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Sample GSM115692 Query DataSets for GSM115692
Status Public on Sep 01, 2006
Title LiverTissue_FeedTreatment_Rodent Chow_Control_Animal29
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade
Organism Mus musculus
Characteristics Array Type: Affymetrix Mouse 430_2
Amount to Core: 10
Units of Amount: ug
OD260: 2.117
OD280: 1.109
Ratio: 1.94
Dilution: 10
RNA Integrity Number: 9.1
Bioanalyzer Results: Excellent
Sample Preservation: RNA later
Strain or Line: B6C3F1
NCBI Taxonomy ID: 10090
Individual: 29
Developmental State: Adult
Sacrifice Method: Pentobarbital (5.2 mg/kg) and exsanguination
Sex: Female
Age: 18
Units of Age: weeks
Biomaterial provider R. Thomas, CIIT Centers for Health Research, 6 Davis Dr, RTP, NC, 27709, R. Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: Rodent Chow, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 7, Units of Treatment Time: days/wk, Route of Exposure: Diet
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description liver tissue, feed treatment, 13 weeks, 7 days per week, rodent chow control
Data processing affylmGUI, The Walter and Eliza Hall Institute of Medical Research
 
Submission date Jun 21, 2006
Last update date Aug 28, 2018
Contact name Russell Scott Thomas
E-mail(s) rthomas@thehamner.org
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE5128 Gene Expression Biomarkers for Predicting Liver Tumors in Two-Year Rodent Bioassays
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe name
VALUE RMA Expressioni Value

Data table
ID_REF VALUE
1415670_at 8.181471245
1415671_at 9.064609493
1415672_at 9.289213059
1415673_at 5.55562758
1415674_a_at 7.23984154
1415675_at 7.340011921
1415676_a_at 9.742314818
1415677_at 9.488212404
1415678_at 9.446094088
1415679_at 9.375775562
1415680_at 7.169234818
1415681_at 8.401398247
1415682_at 6.551196982
1415683_at 9.500564625
1415684_at 8.366053191
1415685_at 7.074384565
1415686_at 8.408378866
1415687_a_at 10.2642434
1415688_at 8.762169001
1415689_s_at 5.663383574

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM115692.CEL.gz 5.9 Mb (ftp)(http) CEL

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