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Sample GSM115694 Query DataSets for GSM115694
Status Public on Sep 01, 2006
Title LiverTissue_FeedTreatment_1,5-Naphthalenediamine_Animal4
Sample type RNA
 
Source name Sample Type: tissue, Tissue: Liver, Tissue Harvest Methods: Tissue was excised from animal, minced, placed in RNA later, and stored at -80 degrees Centigrade
Organism Mus musculus
Characteristics Array Type: Affymetrix Mouse 430_2
Amount to Core: 10
Units of Amount: ug
OD260: 2.565
OD280: 1.334
Ratio: 1.94
Dilution: 10
RNA Integrity Number: 8.9
Bioanalyzer Results: Good
Sample Preservation: RNA later
Strain or Line: B6C3F1
NCBI Taxonomy ID: 10090
Developmental State: Adult
Sacrifice Method: Pentobarbital (5.2 mg/kg) and exsanguination
Sex: Female
Age: 18
Units of Age: weeks
Biomaterial provider R. Thomas, CIIT Centers for Health Research, 6 Davis Dr, RTP, NC, 27709, R. Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
Treatment protocol in vivo Treatment: 1,5-Naphthalenediamine, Treatment Duration: 13, Units of Duration: weeks, Treatment Time: 7, Units of Treatment Time: days/wk, Route of Exposure: Diet, Dose or Concentration: 2000, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description liver tissue, feed treatment, 13 weeks, 7 days per week, 1,5-naphthalenediamine, 2000 ppm
Data processing affylmGUI, The Walter and Eliza Hall Institute of Medical Research
 
Submission date Jun 21, 2006
Last update date Aug 28, 2018
Contact name Russell Scott Thomas
E-mail(s) rthomas@thehamner.org
Phone 919-558-1311
Fax 919-558-1300
Organization name The Hamner Institutes for Health Sciences
Street address 6 Davis Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1261
Series (1)
GSE5128 Gene Expression Biomarkers for Predicting Liver Tumors in Two-Year Rodent Bioassays
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF Affymetrix probe name
VALUE RMA Expressioni Value

Data table
ID_REF VALUE
1415670_at 8.438473885
1415671_at 9.613145693
1415672_at 9.906239322
1415673_at 6.592109467
1415674_a_at 7.824325266
1415675_at 7.271802698
1415676_a_at 10.6072315
1415677_at 9.772544007
1415678_at 10.0834271
1415679_at 9.836170789
1415680_at 7.703493438
1415681_at 8.943974109
1415682_at 7.035078925
1415683_at 9.910234086
1415684_at 9.14716136
1415685_at 8.095744549
1415686_at 8.996040911
1415687_a_at 10.47171519
1415688_at 9.227576937
1415689_s_at 7.148587826

Total number of rows: 45101

Table truncated, full table size 1025 Kbytes.




Supplementary file Size Download File type/resource
GSM115694.CEL.gz 5.8 Mb (ftp)(http) CEL

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