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Sample GSM115950 Query DataSets for GSM115950
Status Public on Jul 07, 2006
Title Adult rat testis-normal 2
Sample type RNA
 
Source name Testis
Organism Rattus norvegicus
Characteristics normal adult rat testis
Extracted molecule total RNA
Extraction protocol 0.1 gram of frozen testis tissue extracted using Trizol (Invitrogen) and followed by RNeasy cleanup (Qiagen)
Label biotin
Label protocol 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description normal adult rat testis
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jun 22, 2006
Last update date Jun 23, 2006
Contact name Weiliang Xia
E-mail(s) wxia@mail.rockefeller.edu
Phone 212-327-8738
Fax 212-327-8733
Organization name Population Council
Street address 1230 York Avenue
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL1355
Series (1)
GSE5131 Adjudin-induced germ cell loss from adult rat testes

Data table header descriptions
ID_REF Name of Affymetrix probe set
VALUE normalized signal intensities by MAS5
ABS-CALL
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS-CALL DETECTION P-VALUE
AFFX-BioB-5_at 256.9 P 0.000754
AFFX-BioB-M_at 618 P 0.000147
AFFX-BioB-3_at 283.2 P 0.000095
AFFX-BioC-5_at 650.5 P 0.000052
AFFX-BioC-3_at 528.6 P 0.000052
AFFX-BioDn-5_at 836.8 P 0.00007
AFFX-BioDn-3_at 3201.1 P 0.00007
AFFX-CreX-5_at 6571 P 0.000044
AFFX-CreX-3_at 8170.4 P 0.000044
AFFX-DapX-5_at 87.4 P 0.000581
AFFX-DapX-M_at 157.6 P 0.001796
AFFX-DapX-3_at 206.9 P 0.000509
AFFX-LysX-5_at 12.6 P 0.021902
AFFX-LysX-M_at 22.2 A 0.327079
AFFX-LysX-3_at 55.2 P 0.000662
AFFX-PheX-5_at 10.9 A 0.13134
AFFX-PheX-M_at 5.5 A 0.425962
AFFX-PheX-3_at 35.8 A 0.123572
AFFX-ThrX-5_at 41.4 P 0.006187
AFFX-ThrX-M_at 54.9 P 0.011384

Total number of rows: 31099

Table truncated, full table size 823 Kbytes.




Supplementary file Size Download File type/resource
GSM115950.CEL.gz 4.5 Mb (ftp)(http) CEL
GSM115950.EXP.gz 500 b (ftp)(http) EXP
Processed data included within Sample table

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