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Sample GSM115951 Query DataSets for GSM115951
Status Public on Jul 07, 2006
Title Adult rat testis-normal 3
Sample type RNA
 
Source name Testis
Organism Rattus norvegicus
Characteristics normal adult rat testis
Extracted molecule total RNA
Extraction protocol 0.1 gram of frozen testis tissue extracted using Trizol (Invitrogen) and followed by RNeasy cleanup (Qiagen)
Label biotin
Label protocol 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description normal adult rat testis
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jun 22, 2006
Last update date Jun 23, 2006
Contact name Weiliang Xia
E-mail(s) wxia@mail.rockefeller.edu
Phone 212-327-8738
Fax 212-327-8733
Organization name Population Council
Street address 1230 York Avenue
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL1355
Series (1)
GSE5131 Adjudin-induced germ cell loss from adult rat testes

Data table header descriptions
ID_REF Name of Affymetrix probe set
VALUE normalized signal intensities by MAS5
ABS-CALL
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS-CALL DETECTION P-VALUE
AFFX-BioB-5_at 218.1 P 0.00034
AFFX-BioB-M_at 346.1 P 0.000127
AFFX-BioB-3_at 185.8 P 0.000195
AFFX-BioC-5_at 763.8 P 0.000052
AFFX-BioC-3_at 741.7 P 0.000044
AFFX-BioDn-5_at 1572.9 P 0.000052
AFFX-BioDn-3_at 3158.4 P 0.00007
AFFX-CreX-5_at 5980.3 P 0.000044
AFFX-CreX-3_at 7389.2 P 0.000044
AFFX-DapX-5_at 199.7 P 0.000044
AFFX-DapX-M_at 348.8 P 0.00034
AFFX-DapX-3_at 539.7 P 0.00006
AFFX-LysX-5_at 25.2 P 0.004998
AFFX-LysX-M_at 63.1 P 0.033677
AFFX-LysX-3_at 96.6 P 0.000662
AFFX-PheX-5_at 32.9 P 0.002023
AFFX-PheX-M_at 38.1 M 0.054213
AFFX-PheX-3_at 82.6 P 0.001248
AFFX-ThrX-5_at 75.5 P 0.00034
AFFX-ThrX-M_at 94.6 P 0.000169

Total number of rows: 31099

Table truncated, full table size 821 Kbytes.




Supplementary file Size Download File type/resource
GSM115951.CEL.gz 4.3 Mb (ftp)(http) CEL
GSM115951.EXP.gz 503 b (ftp)(http) EXP
Processed data included within Sample table

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