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Sample GSM1159631 Query DataSets for GSM1159631
Status Public on May 02, 2014
Title heart_het_rep1
Sample type RNA
Source name heart_het
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype/variation: heterozygote
allele: Endra
tissue: heart
age: 117 days
mouse id: 30241090
gender: male
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 1
replicate 1
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date Jun 10, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47781 ENU mutagenesis derived Ednray129F-/- mice as a new model for human velocardiofacial syndrome/DiGeorg syndrome (VCFS/DGS)

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 4111.927 0
ILMN_2721178 868.3825 0
ILMN_3033922 823.3234 0
ILMN_3092673 3298.038 0
ILMN_2816356 140.5919 0.03508772
ILMN_2808939 278.1908 0
ILMN_2634564 342.1472 0
ILMN_2737647 142.5849 0.02005013
ILMN_2734484 452.4788 0
ILMN_2952292 147.6037 0.006265664
ILMN_2699078 117.8391 0.8245614
ILMN_1213681 1287.68 0
ILMN_2735413 126.909 0.2506266
ILMN_2735415 123.9929 0.4122807
ILMN_2891688 990.2012 0
ILMN_2637698 1040.468 0
ILMN_2674228 282.1841 0
ILMN_2601546 142.7081 0.02005013
ILMN_1230831 125.2976 0.3220551
ILMN_2848071 150.6358 0.005012531

Total number of rows: 25697

Table truncated, full table size 736 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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