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Sample GSM1159633 Query DataSets for GSM1159633
Status Public on May 02, 2014
Title heart_het_rep3
Sample type RNA
Source name heart_het
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype/variation: heterozygote
allele: Endra
tissue: heart
age: 117 days
mouse id: 30241092
gender: male
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 3
replicate 3
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date Jun 10, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47781 ENU mutagenesis derived Ednray129F-/- mice as a new model for human velocardiofacial syndrome/DiGeorg syndrome (VCFS/DGS)

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3139.247 0
ILMN_2721178 741.6754 0
ILMN_3033922 730.6385 0
ILMN_3092673 2799.836 0
ILMN_2816356 138.404 0.01002506
ILMN_2808939 261.1476 0
ILMN_2634564 367.811 0
ILMN_2737647 146.248 0.001253133
ILMN_2734484 330.826 0
ILMN_2952292 137.128 0.01629073
ILMN_2699078 114.7814 0.6842105
ILMN_1213681 1249.44 0
ILMN_2735413 123.2751 0.1829574
ILMN_2735415 123.0298 0.1967418
ILMN_2891688 784.8882 0
ILMN_2637698 816.2117 0
ILMN_2674228 283.9972 0
ILMN_2601546 119.7829 0.3596491
ILMN_1230831 125.0187 0.131579
ILMN_2848071 150.2391 0.001253133

Total number of rows: 25697

Table truncated, full table size 734 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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