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Sample GSM1159634 Query DataSets for GSM1159634
Status Public on May 02, 2014
Title heart_het_rep4
Sample type RNA
Source name heart_het
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype/variation: heterozygote
allele: Endra
tissue: heart
age: 117 days
mouse id: 30241094
gender: male
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 4
replicate 4
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date Jun 10, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47781 ENU mutagenesis derived Ednray129F-/- mice as a new model for human velocardiofacial syndrome/DiGeorg syndrome (VCFS/DGS)

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2523.032 0
ILMN_2721178 470.1785 0
ILMN_3033922 728.4042 0
ILMN_3092673 2744.596 0
ILMN_2816356 135.4121 0.01754386
ILMN_2808939 261.7825 0
ILMN_2634564 375.5116 0
ILMN_2737647 127.0642 0.0952381
ILMN_2734484 305.2026 0
ILMN_2952292 136.668 0.01378446
ILMN_2699078 121.5269 0.3007519
ILMN_1213681 1021.629 0
ILMN_2735413 117.5492 0.5288221
ILMN_2735415 120.2469 0.3634085
ILMN_2891688 788.0433 0
ILMN_2637698 922.1936 0
ILMN_2674228 265.861 0
ILMN_2601546 120.5892 0.3408521
ILMN_1230831 122.4135 0.2443609
ILMN_2848071 156.6493 0.002506266

Total number of rows: 25697

Table truncated, full table size 736 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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