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Sample GSM1159635 Query DataSets for GSM1159635
Status Public on May 02, 2014
Title heart_wt_rep1
Sample type RNA
Source name heart_wt
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype/variation: wild type
allele: Endra
tissue: heart
age: 117 days
mouse id: 30241120
gender: male
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 5
replicate 1
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date Jun 10, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47781 ENU mutagenesis derived Ednray129F-/- mice as a new model for human velocardiofacial syndrome/DiGeorg syndrome (VCFS/DGS)

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3144.972 0
ILMN_2721178 526.1331 0
ILMN_3033922 644.9791 0
ILMN_3092673 2606.025 0
ILMN_2816356 127.7024 0.02380952
ILMN_2808939 239.0248 0
ILMN_2634564 338.7154 0
ILMN_2737647 122.4608 0.0914787
ILMN_2734484 308.4069 0
ILMN_2952292 134.948 0.003759399
ILMN_2699078 110.3872 0.7706767
ILMN_1213681 948.263 0
ILMN_2735413 110.7579 0.7493734
ILMN_2735415 113.8221 0.4661654
ILMN_2891688 746.1405 0
ILMN_2637698 743.2032 0
ILMN_2674228 244.312 0
ILMN_2601546 118.1575 0.2055138
ILMN_1230831 112.3835 0.5964912
ILMN_2848071 132.1534 0.0112782

Total number of rows: 25697

Table truncated, full table size 732 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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