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Sample GSM1159638 Query DataSets for GSM1159638
Status Public on May 02, 2014
Title heart_wt_rep4
Sample type RNA
 
Source name heart_wt
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype/variation: wild type
allele: Endra
tissue: heart
age: 117 days
mouse id: 30241123
gender: male
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 8
replicate 4
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
 
Submission date Jun 10, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE47781 ENU mutagenesis derived Ednray129F-/- mice as a new model for human velocardiofacial syndrome/DiGeorg syndrome (VCFS/DGS)

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 4142.356 0
ILMN_2721178 119.8353 0.302005
ILMN_3033922 119.3165 0.3320802
ILMN_3092673 3462.161 0
ILMN_2816356 128.2574 0.05263158
ILMN_2808939 162.7219 0.001253133
ILMN_2634564 515.6545 0
ILMN_2737647 121.3935 0.226817
ILMN_2734484 419.123 0
ILMN_2952292 154.9244 0.001253133
ILMN_2699078 113.9454 0.7593985
ILMN_1213681 401.8585 0
ILMN_2735413 115.2634 0.6666667
ILMN_2735415 116.1034 0.585213
ILMN_2891688 836.1395 0
ILMN_2637698 959.5486 0
ILMN_2674228 126.3809 0.0764411
ILMN_2601546 113.8035 0.7669173
ILMN_1230831 120.0039 0.2932331
ILMN_2848071 130.861 0.02756892

Total number of rows: 25697

Table truncated, full table size 763 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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