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Sample GSM1159640 Query DataSets for GSM1159640
Status Public on May 02, 2014
Title bone_wt_rep2
Sample type RNA
 
Source name bone_wt
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype/variation: wild type
allele: Endra
tissue: bone
age: 117 days
mouse id: 10427962
gender: male
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 10
replicate 2
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
 
Submission date Jun 10, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE47781 ENU mutagenesis derived Ednray129F-/- mice as a new model for human velocardiofacial syndrome/DiGeorg syndrome (VCFS/DGS)

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3076.996 0
ILMN_2721178 719.8914 0
ILMN_3033922 458.7515 0
ILMN_3092673 2670.362 0
ILMN_2816356 166.2138 0.01253133
ILMN_2808939 738.9115 0
ILMN_2634564 477.7272 0
ILMN_2737647 147.268 0.1328321
ILMN_2734484 523.028 0
ILMN_2952292 213.2502 0.001253133
ILMN_2699078 130.7518 0.8847118
ILMN_1213681 459.7298 0
ILMN_2735413 137.1598 0.5125313
ILMN_2735415 140.8687 0.3145363
ILMN_2891688 643.1681 0
ILMN_2637698 1364.052 0
ILMN_2674228 463.5489 0
ILMN_2601546 144.4848 0.1779449
ILMN_1230831 150.5056 0.08270676
ILMN_2848071 159.5477 0.02756892

Total number of rows: 25697

Table truncated, full table size 762 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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