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Sample GSM1159641 Query DataSets for GSM1159641
Status Public on May 02, 2014
Title bone_wt_rep3
Sample type RNA
Source name bone_wt
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype/variation: wild type
allele: Endra
tissue: bone
age: 117 days
mouse id: 10427831
gender: male
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 11
replicate 3
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date Jun 10, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47781 ENU mutagenesis derived Ednray129F-/- mice as a new model for human velocardiofacial syndrome/DiGeorg syndrome (VCFS/DGS)

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2745.779 0
ILMN_2721178 736.2235 0
ILMN_3033922 578.8818 0
ILMN_3092673 2449.808 0
ILMN_2816356 156.7922 0.01754386
ILMN_2808939 663.2477 0
ILMN_2634564 388.0567 0
ILMN_2737647 136.3946 0.283208
ILMN_2734484 473.4744 0
ILMN_2952292 200.84 0.001253133
ILMN_2699078 130.4312 0.6278195
ILMN_1213681 367.9265 0
ILMN_2735413 125.5193 0.8859649
ILMN_2735415 137.2285 0.2506266
ILMN_2891688 526.0921 0
ILMN_2637698 1261.387 0
ILMN_2674228 430.7721 0
ILMN_2601546 139.7075 0.1779449
ILMN_1230831 134.5566 0.377193
ILMN_2848071 148.3819 0.06390978

Total number of rows: 25697

Table truncated, full table size 758 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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