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Sample GSM1159645 Query DataSets for GSM1159645
Status Public on May 02, 2014
Title bone_het_rep3
Sample type RNA
Source name bone_het
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype/variation: heterozygote
allele: Endra
tissue: bone
age: 117 days
mouse id: 10427832
gender: male
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 15
replicate 3
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date Jun 10, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47781 ENU mutagenesis derived Ednray129F-/- mice as a new model for human velocardiofacial syndrome/DiGeorg syndrome (VCFS/DGS)

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2763.119 0
ILMN_2721178 689.4651 0
ILMN_3033922 601.3078 0
ILMN_3092673 2467.574 0
ILMN_2816356 151.7517 0.01879699
ILMN_2808939 685.7027 0
ILMN_2634564 388.9061 0
ILMN_2737647 129.0189 0.4661654
ILMN_2734484 408.2786 0
ILMN_2952292 206.1027 0.001253133
ILMN_2699078 120.582 0.9122807
ILMN_1213681 337.5092 0.001253133
ILMN_2735413 132.3681 0.3195489
ILMN_2735415 135.4212 0.197995
ILMN_2891688 573.442 0
ILMN_2637698 1150.349 0
ILMN_2674228 433.9796 0
ILMN_2601546 137.6892 0.1491228
ILMN_1230831 133.9521 0.2406015
ILMN_2848071 157.453 0.00877193

Total number of rows: 25697

Table truncated, full table size 759 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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