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Sample GSM1159646 Query DataSets for GSM1159646
Status Public on May 02, 2014
Title bone_het_rep4
Sample type RNA
 
Source name bone_het
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype/variation: heterozygote
allele: Endra
tissue: bone
age: 117 days
mouse id: 10427831
gender: male
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 16
replicate 4
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
 
Submission date Jun 10, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE47781 ENU mutagenesis derived Ednray129F-/- mice as a new model for human velocardiofacial syndrome/DiGeorg syndrome (VCFS/DGS)

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2295.122 0
ILMN_2721178 603.7169 0
ILMN_3033922 550.6034 0
ILMN_3092673 1966.105 0
ILMN_2816356 144.9091 0.005012531
ILMN_2808939 481.4987 0
ILMN_2634564 371.8179 0
ILMN_2737647 130.5927 0.0839599
ILMN_2734484 285.6981 0.001253133
ILMN_2952292 163.9882 0.001253133
ILMN_2699078 117.6188 0.6942356
ILMN_1213681 342.1333 0
ILMN_2735413 114.8064 0.8471178
ILMN_2735415 124.1033 0.2769423
ILMN_2891688 485.4598 0
ILMN_2637698 854.134 0
ILMN_2674228 370.4011 0
ILMN_2601546 122.9414 0.3270677
ILMN_1230831 128.959 0.1115288
ILMN_2848071 132.6383 0.06766918

Total number of rows: 25697

Table truncated, full table size 762 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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