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Sample GSM1159648 Query DataSets for GSM1159648
Status Public on May 02, 2014
Title wh fat_wt_rep2
Sample type RNA
 
Source name wh fat_wt
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype/variation: wild type
allele: Endra
tissue: white adipose tissue
age: 117 days
mouse id: 10427962
gender: male
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 18
replicate 2
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
 
Submission date Jun 10, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE47781 ENU mutagenesis derived Ednray129F-/- mice as a new model for human velocardiofacial syndrome/DiGeorg syndrome (VCFS/DGS)

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 4878.896 0
ILMN_2721178 1473.414 0
ILMN_3033922 3073.421 0
ILMN_3092673 11370.03 0
ILMN_2816356 352.7894 0
ILMN_2808939 777.3938 0
ILMN_2634564 714.5074 0
ILMN_2737647 187.1884 0.05889724
ILMN_2734484 714.2411 0
ILMN_2952292 198.4422 0.03007519
ILMN_2699078 151.9414 0.7844611
ILMN_1213681 720.0356 0
ILMN_2735413 191.1946 0.04260652
ILMN_2735415 186.7784 0.06015038
ILMN_2891688 1062.637 0
ILMN_2637698 2313.99 0
ILMN_2674228 474.3186 0
ILMN_2601546 179.968 0.1090226
ILMN_1230831 181.2738 0.0989975
ILMN_2848071 197.7012 0.03007519

Total number of rows: 25697

Table truncated, full table size 717 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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