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Sample GSM1159650 Query DataSets for GSM1159650
Status Public on May 02, 2014
Title wh fat_wt_rep4
Sample type RNA
Source name wh fat_wt
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype/variation: wild type
allele: Endra
tissue: white adipose tissue
age: 117 days
mouse id: 10427835
gender: male
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 20
replicate 4
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date Jun 10, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47781 ENU mutagenesis derived Ednray129F-/- mice as a new model for human velocardiofacial syndrome/DiGeorg syndrome (VCFS/DGS)

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 4284.352 0
ILMN_2721178 1455.63 0
ILMN_3033922 2712.326 0
ILMN_3092673 9989.83 0
ILMN_2816356 347.2293 0
ILMN_2808939 647.038 0
ILMN_2634564 577.6429 0
ILMN_2737647 160.0001 0.1616541
ILMN_2734484 590.9069 0
ILMN_2952292 185.6227 0.01754386
ILMN_2699078 140.3051 0.7005013
ILMN_1213681 673.3022 0
ILMN_2735413 191.2467 0.0112782
ILMN_2735415 184.0417 0.01879699
ILMN_2891688 970.2612 0
ILMN_2637698 2180.272 0
ILMN_2674228 450.6779 0
ILMN_2601546 157.0294 0.1917293
ILMN_1230831 156.7101 0.1992481
ILMN_2848071 175.2519 0.04511278

Total number of rows: 25697

Table truncated, full table size 720 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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