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Sample GSM1159652 Query DataSets for GSM1159652
Status Public on May 02, 2014
Title wh fat_het_rep2
Sample type RNA
Source name wh fat_het
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype/variation: heterozygote
allele: Endra
tissue: white adipose tissue
age: 117 days
mouse id: 10427833
gender: male
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 22
replicate 2
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date Jun 10, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47781 ENU mutagenesis derived Ednray129F-/- mice as a new model for human velocardiofacial syndrome/DiGeorg syndrome (VCFS/DGS)

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 4628.413 0
ILMN_2721178 1408.027 0
ILMN_3033922 2169.382 0
ILMN_3092673 9270.583 0
ILMN_2816356 262.7616 0
ILMN_2808939 617.7014 0
ILMN_2634564 666.308 0
ILMN_2737647 156.7733 0.1177945
ILMN_2734484 424.4553 0
ILMN_2952292 185.8506 0.005012531
ILMN_2699078 136.8062 0.6729323
ILMN_1213681 698.2092 0
ILMN_2735413 177.771 0.02005013
ILMN_2735415 179.5391 0.01879699
ILMN_2891688 837.2012 0
ILMN_2637698 1865.424 0
ILMN_2674228 522.8455 0
ILMN_2601546 157.3548 0.112782
ILMN_1230831 164.3928 0.06015038
ILMN_2848071 160.061 0.0877193

Total number of rows: 25697

Table truncated, full table size 719 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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