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Sample GSM1159654 Query DataSets for GSM1159654
Status Public on May 02, 2014
Title wh fat_het_rep4
Sample type RNA
Source name wh fat_het
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype/variation: heterozygote
allele: Endra
tissue: white adipose tissue
age: 117 days
mouse id: 10427831
gender: male
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 24
replicate 4
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio 2011.1
Submission date Jun 10, 2013
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE47781 ENU mutagenesis derived Ednray129F-/- mice as a new model for human velocardiofacial syndrome/DiGeorg syndrome (VCFS/DGS)

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 4319.391 0
ILMN_2721178 1370.357 0
ILMN_3033922 2060.72 0
ILMN_3092673 9517.442 0
ILMN_2816356 263.743 0
ILMN_2808939 593.619 0
ILMN_2634564 582.6025 0
ILMN_2737647 163.0718 0.07017544
ILMN_2734484 552.7574 0
ILMN_2952292 184.7372 0.00877193
ILMN_2699078 133.5823 0.7543859
ILMN_1213681 660.1385 0
ILMN_2735413 165.9588 0.06140351
ILMN_2735415 171.1675 0.03508772
ILMN_2891688 850.3242 0
ILMN_2637698 1776.59 0
ILMN_2674228 467.569 0
ILMN_2601546 151.3224 0.1654135
ILMN_1230831 151.0068 0.1691729
ILMN_2848071 173.0475 0.03007519

Total number of rows: 25697

Table truncated, full table size 727 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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