NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM116209 Query DataSets for GSM116209
Status Public on Mar 23, 2015
Title Radiation induced C3H mouse Fibrosarcoma, no irradiation (g_8520_0_1d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Radiation induced C3H mouse Fibrosarcoma eatablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description no irradiation
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 13003.5244 108.6570 G 139.7596 13082.5244 5239.0000 14738.6631 187 15.4303531646729 93.6073518410391 79.0321 79.0000 9.7382 193 108.6570
1002 2370.9412 19.8115 G 27.0502 2447.9412 2402.0000 1584.4592 155 14.04820728302 90.4962459349265 77.2692 77.0000 8.9975 188 19.8115
1003 60.2076 0.5031 G 1.5132 135.2076 138.0000 18.2010 108 11.7264604568481 89.3499119422894 76.6555 75.0000 9.5666 123 0.5031
1004 257.9504 2.1554 G 3.6595 333.9504 359.0000 96.7020 123 12.5143299102783 91.2547577981477 77.4706 76.0000 10.1698 123 2.1554
1005 166.4286 1.3907 G 2.6730 243.4286 262.0000 65.7193 84 10.3417663574219 91.0694787647681 77.5311 77.0000 9.3797 183 1.3907
1006 26.7692 0.2237 G 1.1345 105.7692 106.0000 14.6925 65 9.09728336334229 93.2285174890556 79.0000 79.0000 9.4857 188 0.2237
1007 13095.7891 109.4279 G 140.3150 13173.7891 4693.0000 15046.7578 196 15.7973079681396 93.8872351543142 79.2944 78.0000 10.5915 222 109.4279
1008 12050.1934 100.6910 G 130.1789 12129.1934 3715.0000 14374.1309 193 15.6759443283081 93.1732381305921 78.8233 79.0000 9.4488 223 100.6910
1010 677.4286 5.6606 G 8.2712 754.4286 861.0000 305.7259 135 13.1105813980103 91.2115437165873 77.5929 77.0000 9.4744 117 5.6606
1012 1091.8850 9.1238 G 12.7590 1168.8850 1357.0000 702.9695 115 12.1005182266235 91.6127535614856 77.6891 77.0000 9.7418 123 9.1238
1013 96.8765 0.8095 G 1.9027 174.8765 173.0000 32.7091 81 10.1554126739502 91.9106290089136 78.3757 78.0000 9.2738 187 0.8095
1014 13602.1123 113.6588 G 142.2270 13683.1123 6355.0000 14650.8496 171 14.7554721832275 96.2061687244066 80.8783 81.0000 10.1374 119 113.6588
1015 12967.8809 108.3591 G 135.8812 13049.8809 4727.0000 14700.2539 178 15.0544557571411 96.0388810382172 80.7333 82.0000 9.3593 124 108.3591
1017 34.3924 0.2874 G 1.2402 110.3924 112.0000 15.4563 79 10.0292530059814 89.0111895667085 77.2253 76.0000 8.6741 188 0.2874
1018 91.8370 0.7674 G 1.8447 168.8370 173.0000 23.0657 92 10.8230323791504 91.5270452893437 77.6978 77.0000 9.6847 188 0.7674
1019 128.6098 1.0747 G 2.2892 204.6098 217.0000 48.9145 82 10.2179079055786 89.379241161907 76.5611 76.0000 8.9195 186 1.0747
1020 46.8472 0.3915 G 1.3365 126.8472 125.0000 16.2964 72 9.57461452484131 94.9090785840661 80.5556 80.0000 9.9394 186 0.3915
1021 12557.6689 104.9314 G 135.7959 12635.6689 4605.0000 14414.3262 186 15.3890399932861 93.0489838832863 78.2332 78.0000 10.0327 231 104.9314
1022 13283.0000 110.9923 G 143.3118 13362.0000 5151.0000 14646.7734 172 14.7985544204712 93.2372941070875 79.2703 79.0000 9.4915 115 110.9923
1024 7.9524 L 0.9311 85.9524 86.0000 10.8889 42 7.3127326965332 92.3137748151729 78.0338 78.0000 9.5425 154 0.0664

Total number of rows: 36227

Table truncated, full table size 4564 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap