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Sample GSM116214 Query DataSets for GSM116214
Status Public on Mar 23, 2015
Title Radiation induced C3H mouse Fibrosarcoma, 8 days after gamma irradiation at 30Gy (g_8520_30_8d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Radiation induced C3H mouse Fibrosarcoma eatablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 8days after gamma irradiation at 30Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 5773.9937 73.4773 G 66.9001 5848.9937 4954.0000 5417.0605 158 14.1835060119629 87.4287221588975 75.1780 75.0000 8.2858 122 73.4773
1002 1047.0638 13.3245 G 12.6285 1123.0638 1314.0000 608.7211 143 13.4934520721436 88.9309986378871 75.9858 76.0000 8.6207 220 13.3245
1003 19.7333 0.2511 G 1.0785 95.7333 96.0000 11.7045 60 8.74038791656494 88.7648030984309 76.0442 76.0000 8.5099 187 0.2511
1004 45.7019 0.5816 G 1.3696 118.7019 117.0000 15.7961 106 11.617374420166 86.6665412173636 74.3500 73.0000 9.1110 124 0.5816
1005 61.4722 0.7823 G 1.5508 136.4722 138.0000 23.7919 72 9.57461452484131 88.0006807528284 74.7401 75.0000 8.6671 183 0.7823
1006 13.1538 0.1674 G 1.0102 87.1538 89.0000 9.7705 39 7.04672574996948 86.270715843332 74.2033 74.0000 8.1805 188 0.1674
1007 5748.4746 73.1525 G 65.4374 5824.4746 4091.0000 5522.4053 160 14.2729930877686 89.0084051484172 74.9917 76.0000 8.6723 124 73.1525
1008 5965.0259 75.9082 G 69.0174 6041.0259 3869.0000 5785.9995 158 14.1835060119629 87.5289754189966 75.3846 76.0000 7.6860 121 75.9082
1010 281.9065 3.5874 G 4.1206 355.9065 395.0000 124.5358 141 13.3987598419189 86.3729405579763 74.7387 74.0000 8.2486 230 3.5874
1012 403.0417 5.1289 G 5.5574 476.0417 525.0000 180.9879 96 11.0558128356934 85.6582915029897 74.1813 73.0000 8.4389 188 5.1289
1013 31.6184 0.4024 G 1.2290 105.6184 103.0000 14.3563 76 9.83698177337646 85.9397413111523 74.4670 74.0000 7.9598 188 0.4024
1014 5975.3623 76.0398 G 68.6998 6050.3623 4348.0000 5738.0845 162 14.3619222640991 88.0695198223669 75.0000 75.0000 8.7130 124 76.0398
1015 6359.3740 80.9265 G 73.0145 6434.3740 5313.0000 5703.7495 157 14.1385507583618 88.1245830920886 75.2250 75.0000 8.7497 124 80.9265
1017 43.9157 0.5589 G 1.3632 119.9157 119.0000 12.6788 83 10.2800235748291 87.9644911944172 76.5819 76.0000 7.9763 183 0.5589
1018 21.8209 0.2777 G 1.0923 97.8209 99.0000 12.6608 67 9.23618125915527 89.5577202746602 75.4270 76.0000 9.0385 184 0.2777
1019 65.1341 0.8289 G 1.6185 139.1341 139.0000 25.6195 82 10.2179079055786 85.9659074253001 74.9780 74.0000 7.9773 188 0.8289
1020 18.7778 0.2390 G 1.0704 94.7778 91.0000 21.8849 54 8.29185962677002 88.5482071812541 75.9505 76.0000 8.3655 188 0.2390
1021 6145.0762 78.1995 G 71.3901 6220.0762 4698.0000 5607.2783 160 14.2729930877686 87.1280139092282 75.9652 75.0000 8.0853 119 78.1995
1022 5959.9253 75.8433 G 69.2833 6033.9253 4524.0000 5566.2925 149 13.7736234664917 87.0906133518392 74.0180 74.0000 8.7271 115 75.8433
1024 6.5000 L 0.9192 78.5000 79.0000 10.5746 84 10.3417663574219 85.399090796146 72.4403 72.0000 8.9327 165 0.0827

Total number of rows: 36227

Table truncated, full table size 4525 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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