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Sample GSM116216 Query DataSets for GSM116216
Status Public on Mar 23, 2015
Title Radiation induced C3H mouse Fibrosarcoma, 16 days after gamma irradiation at 30Gy (g_8520_30_16d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Radiation induced C3H mouse Fibrosarcoma eatablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 16days after gamma irradiation at 30Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 6167.8613 78.2982 G 67.7313 6246.8613 3839.0000 6033.4741 146 13.6342573165894 92.2300308447737 78.8750 79.0000 8.8200 124 78.2982
1002 1100.3090 13.9679 G 12.8326 1178.3090 1329.0000 576.1955 125 12.6156625747681 91.8213615194611 77.7573 78.0000 9.2142 107 13.9679
1003 21.6885 0.2753 G 1.0948 98.6885 97.0000 11.8827 61 8.81292343139648 90.1399756733147 76.2389 77.0000 8.7600 186 0.2753
1004 55.1023 0.6995 G 1.4703 131.1023 132.0000 21.3158 88 10.5851345062256 89.1660967873987 76.0824 76.0000 8.7774 188 0.6995
1005 23.5385 0.2988 G 1.1148 100.5385 99.0000 12.0790 52 8.1368579864502 90.1871875205183 77.8857 77.0000 8.7915 181 0.2988
1006 7.0112 L 0.9378 83.0112 81.0000 9.0037 89 10.6451082229614 88.5130750071341 75.9518 76.0000 8.3420 236 0.0890
1007 5758.8291 73.1057 G 65.7899 5834.8291 3517.0000 5973.2422 160 14.2729930877686 88.6888150185285 76.0083 76.0000 8.4592 124 73.1057
1008 6038.8638 76.6606 G 69.0765 6114.8638 3473.0000 6199.7065 156 14.093451499939 88.5231080967498 77.0625 76.0000 8.3487 116 76.6606
1010 257.4359 3.2680 G 3.7884 332.4359 361.0000 101.0898 119 12.3091630935669 87.7498954839303 75.3667 75.0000 8.4999 124 3.2680
1012 323.9468 4.1124 G 4.4920 400.9468 449.0000 161.5156 94 10.9400415420532 89.2572872356066 77.3791 77.0000 8.1715 188 4.1124
1013 34.1286 0.4332 G 1.2460 109.1286 110.0000 12.2928 70 9.44069766998291 87.5849120435607 75.6538 75.0000 8.3899 188 0.4332
1014 6771.4204 85.9601 G 75.2153 6849.4204 3941.0000 6719.6689 159 14.2283201217651 91.0642071738655 77.9417 78.0000 8.7095 124 85.9601
1015 5956.6665 75.6172 G 69.4749 6030.6665 3578.0000 5907.4634 158 14.1835060119629 86.8035109204526 75.2250 74.0000 8.5357 124 75.6172
1017 36.6939 0.4658 G 1.2802 112.6939 114.0000 12.8598 100 11.2837915420532 88.0315017353109 76.4464 76.0000 8.0210 116 0.4658
1018 22.5000 0.2856 G 1.1129 96.5000 95.0000 10.6706 72 9.57461452484131 86.708314329643 74.1868 74.0000 8.4722 188 0.2856
1019 61.9859 0.7869 G 1.5548 136.9859 139.0000 21.1337 71 9.50789165496826 88.1070919651354 75.3022 75.0000 8.7381 188 0.7869
1020 18.9200 0.2402 G 1.0819 92.9200 92.0000 10.6768 50 7.97884559631348 85.8849176315372 73.9222 74.0000 7.9233 173 0.2402
1021 5451.2832 69.2016 G 63.8325 5525.2832 2163.0000 5849.9692 168 14.6254653930664 86.5590804544397 74.7748 74.0000 8.3727 115 69.2016
1022 6132.7617 77.8526 G 70.8877 6206.7617 5088.0000 5635.2568 128 12.7661533355713 87.5577211454006 74.8500 74.0000 9.0385 186 77.8526
1024 7.1351 L 0.9491 83.1351 84.0000 8.5429 37 6.86366271972656 87.5949286765459 75.6077 76.0000 7.7300 187 0.0906

Total number of rows: 36227

Table truncated, full table size 4525 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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